Reference

DeepGenomeScan general function DeepGenomeScan functions
DeepGenomeScan	Implementation of deep learning based genome scan
DLqvalues()	Calculating q-values from importance values
Importance methods
varImp() varImp() varImp() varImp() varImp()	Variable importance for DeepGenomeScan models
CNN_varIMP_NULL_model()	CNN variable importance using NULL model
CNN_varIMP_permute()	CNN variable importance using permutation
MLP_varIMP_NULL_model()	MLP variable importance using NULL model
MLP_varIMP_permute()	MLP variable importance using permutation
GarsonWeights()	Estimating Garson weights from neural networks
GarsonWeights_FCNN4R()	Estimating Garson weights from FCNN4R models
Models
model_info	Available models in DeepGenomeScan
Activations
Activation_info	Activation function list
Example data
sim_example	Simulated data example with 10 environmental factors.